Detailed information of SNP:
|
SNP ID:
sf0700637475(Gbrowse)
Chromosome: chr07 Position: 637475 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 799 | 79.97% | 20.03% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700637475 | A->G | INTERGENIC | None |