Detailed information of SNP:
|
SNP ID:
sf0700638795(Gbrowse)
Chromosome: chr07 Position: 638795 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.57% | 35.43% |
| All Indica | 796 | 39.07% | 60.93% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 34.93% | 65.07% |
| Indica II | 211 | 46.45% | 53.55% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700638795 | G->T | INTERGENIC | None |