Detailed information of SNP:
|
SNP ID:
sf0700644458(Gbrowse)
Chromosome: chr07 Position: 644458 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 63.64% | 36.36% |
| All Indica | 792 | 39.39% | 60.61% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 372 | 38.71% | 61.29% |
| Indica II | 210 | 47.62% | 52.38% |
| Indica Intermediate | 210 | 32.38% | 67.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700644458 | G->C | INTERGENIC | None |