Detailed information of SNP:
|
SNP ID:
sf0700674337(Gbrowse)
Chromosome: chr07 Position: 674337 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 63.04% | 36.96% |
| All Indica | 797 | 38.27% | 61.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 212 | 45.75% | 54.25% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700674337 | A->G | INTERGENIC | None |