Detailed information of SNP:
|
SNP ID:
sf0700710476(Gbrowse)
Chromosome: chr07 Position: 710476 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 56.81% | 43.19% |
| All Indica | 791 | 34.01% | 65.99% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 369 | 27.91% | 72.09% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700710476 | G->C | LOC_Os07g02230(LOC_Os07g02230.1) | Synonymous |