Detailed information of SNP:
|
SNP ID:
sf0700833658(Gbrowse)
Chromosome: chr07 Position: 833658 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 97.88% | 2.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700833658 | C->A | LOC_Os07g02430(LOC_Os07g02430.1) | UTR_3_PRIME |