Detailed information of SNP:
|
SNP ID:
sf0700857516(Gbrowse)
Chromosome: chr07 Position: 857516 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.40% | 44.60% |
| All Indica | 798 | 30.20% | 69.80% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 2.40% | 97.60% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700857516 | A->C | LOC_Os07g02480(LOC_Os07g02480.1) | Non-Synonymous SNP |