Detailed information of SNP:
|
SNP ID:
sf0700892465(Gbrowse)
Chromosome: chr07 Position: 892465 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 97.46% | 2.54% |
| All Indica | 761 | 95.66% | 4.34% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 95.49% | 4.51% |
| Indica II | 203 | 95.57% | 4.43% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700892465 | T->A | INTERGENIC | None |