Detailed information of SNP:
|
SNP ID:
sf0700905275(Gbrowse)
Chromosome: chr07 Position: 905275 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.68% | 10.32% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 494 | 95.55% | 4.45% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700905275 | G->A | INTERGENIC | None |