Detailed information of SNP:
|
SNP ID:
sf0700968178(Gbrowse)
Chromosome: chr07 Position: 968178 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 79.37% | 20.63% |
| All Indica | 774 | 63.95% | 36.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 50.00% | 50.00% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 205 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700968178 | C->T | LOC_Os07g02674(LOC_Os07g02674.1) | INTRON |