Detailed information of SNP:
|
SNP ID:
sf0700973440(Gbrowse)
Chromosome: chr07 Position: 973440 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.99% | 42.01% |
| All Indica | 798 | 87.59% | 12.41% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700973440 | A->T | INTERGENIC | None |