Detailed information of SNP:
|
SNP ID:
sf0701004739(Gbrowse)
Chromosome: chr07 Position: 1004739 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1339 | 89.32% | 10.68% |
| All Indica | 720 | 80.56% | 19.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 328 | 71.65% | 28.35% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 186 | 80.11% | 19.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701004739 | G->C | INTERGENIC | None |