Detailed information of SNP:



SNP ID: sf0701004739(Gbrowse)

Chromosome: chr07

Position: 1004739
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1339 89.32% 10.68%
All Indica720 80.56% 19.44%
All Japonica497 99.80% 0.20%
Aus66 98.48% 1.52%
Indica I328 71.65% 28.35%
Indica II206 95.15% 4.85%
Indica Intermediate186 80.11% 19.89%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0701004739 G->C INTERGENIC None