Detailed information of SNP:
|
SNP ID:
sf0701029912(Gbrowse)
Chromosome: chr07 Position: 1029912 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 85.90% | 14.10% |
| All Indica | 790 | 90.51% | 9.49% |
| All Japonica | 421 | 74.82% | 25.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 70.87% | 29.13% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 280 | 89.64% | 10.36% |
| Tropical Japonica | 84 | 48.81% | 51.19% |
| Japonica Intermediate | 57 | 40.35% | 59.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701029912 | G->A | INTERGENIC | None |