Detailed information of SNP:
|
SNP ID:
sf0701064951(Gbrowse)
Chromosome: chr07 Position: 1064951 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1226 | 52.85% | 47.15% |
| All Indica | 623 | 22.15% | 77.85% |
| All Japonica | 494 | 97.17% | 2.83% |
| Aus | 60 | 18.33% | 81.67% |
| Indica I | 282 | 8.87% | 91.13% |
| Indica II | 177 | 48.59% | 51.41% |
| Indica Intermediate | 164 | 16.46% | 83.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701064951 | A->G | INTERGENIC | None |