Detailed information of SNP:
|
SNP ID:
sf0701127221(Gbrowse)
Chromosome: chr07 Position: 1127221 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 93.66% | 6.34% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 470 | 87.23% | 12.77% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 83.12% | 16.88% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701127221 | C->A | INTERGENIC | None |