Detailed information of SNP:
|
SNP ID:
sf0701245321(Gbrowse)
Chromosome: chr07 Position: 1245321 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.67% | 49.33% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701245321 | T->C | LOC_Os07g03180(LOC_Os07g03180.1) | UTR_5_PRIME |