Detailed information of SNP:
|
SNP ID:
sf0701260601(Gbrowse)
Chromosome: chr07 Position: 1260601 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 85.41% | 14.59% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701260601 | A->G | LOC_Os07g03210(LOC_Os07g03210.1) | INTRON |