Detailed information of SNP:
|
SNP ID:
sf0701268751(Gbrowse)
Chromosome: chr07 Position: 1268751 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.12% | 13.88% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 68.81% | 31.19% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701268751 | C->T | INTERGENIC | None |