Detailed information of SNP:
|
SNP ID:
sf0701269264(Gbrowse)
Chromosome: chr07 Position: 1269264 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 54.43% | 45.57% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 63 | 82.54% | 17.46% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701269264 | T->G | INTERGENIC | None |