Detailed information of SNP:
|
SNP ID:
sf0701287022(Gbrowse)
Chromosome: chr07 Position: 1287022 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 93.88% | 6.12% |
| All Indica | 772 | 89.90% | 10.10% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 84.17% | 15.83% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 201 | 91.04% | 8.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701287022 | G->A | INTERGENIC | None |