Detailed information of SNP:
|
SNP ID:
sf0701294150(Gbrowse)
Chromosome: chr07 Position: 1294150 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 92.13% | 7.87% |
| All Indica | 788 | 86.17% | 13.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 367 | 75.75% | 24.25% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701294150 | T->A | INTERGENIC | None |