Detailed information of SNP:
|
SNP ID:
sf0701296126(Gbrowse)
Chromosome: chr07 Position: 1296126 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 796 | 31.78% | 68.22% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 6.68% | 93.32% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 210 | 26.67% | 73.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701296126 | C->T | INTERGENIC | None |