Detailed information of SNP:
|
SNP ID:
sf0701300806(Gbrowse)
Chromosome: chr07 Position: 1300806 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.55% | 38.45% |
| All Indica | 795 | 35.85% | 64.15% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 9.07% | 90.93% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 209 | 35.89% | 64.11% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701300806 | G->T | LOC_Os07g03250(LOC_Os07g03250.1) | INTRON |