Detailed information of SNP:
|
SNP ID:
sf0701308447(Gbrowse)
Chromosome: chr07 Position: 1308447 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.57% | 42.43% |
| All Indica | 796 | 34.80% | 65.20% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 7.47% | 92.53% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 208 | 35.10% | 64.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701308447 | G->A | INTERGENIC | None |