Detailed information of SNP:
|
SNP ID:
sf0701435306(Gbrowse)
Chromosome: chr07 Position: 1435306 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 90.30% | 9.70% |
| All Indica | 791 | 88.24% | 11.76% |
| All Japonica | 489 | 91.82% | 8.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 64.08% | 35.92% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 89 | 68.54% | 31.46% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701435306 | T->C | INTERGENIC | None |