Detailed information of SNP:
|
SNP ID:
sf0701449700(Gbrowse)
Chromosome: chr07 Position: 1449700 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 58.17% | 41.83% |
| All Indica | 794 | 33.63% | 66.37% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 7.24% | 92.76% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 208 | 30.77% | 69.23% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701449700 | G->A | INTERGENIC | None |