Detailed information of SNP:
|
SNP ID:
sf0701478081(Gbrowse)
Chromosome: chr07 Position: 1478081 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 59.57% | 40.43% |
| All Indica | 787 | 86.28% | 13.72% |
| All Japonica | 487 | 11.29% | 88.71% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 204 | 69.12% | 30.88% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 330 | 4.55% | 95.45% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701478081 | A->G | INTERGENIC | None |