Detailed information of SNP:
|
SNP ID:
sf0701480335(Gbrowse)
Chromosome: chr07 Position: 1480335 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 62.79% | 37.21% |
| All Indica | 781 | 88.99% | 11.01% |
| All Japonica | 457 | 11.82% | 88.18% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 200 | 75.50% | 24.50% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 312 | 4.49% | 95.51% |
| Tropical Japonica | 87 | 26.44% | 73.56% |
| Japonica Intermediate | 58 | 29.31% | 70.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701480335 | T->C | INTERGENIC | None |