Detailed information of SNP:
|
SNP ID:
sf0701483527(Gbrowse)
Chromosome: chr07 Position: 1483527 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 62.14% | 37.86% |
| All Indica | 779 | 90.89% | 9.11% |
| All Japonica | 482 | 8.92% | 91.08% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 199 | 79.90% | 20.10% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 327 | 3.36% | 96.64% |
| Tropical Japonica | 91 | 19.78% | 80.22% |
| Japonica Intermediate | 64 | 21.88% | 78.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701483527 | C->T | INTERGENIC | None |