Detailed information of SNP:
|
SNP ID:
sf0701494062(Gbrowse)
Chromosome: chr07 Position: 1494062 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 97.36% | 2.64% |
| All Indica | 794 | 98.49% | 1.51% |
| All Japonica | 484 | 95.45% | 4.55% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701494062 | C->A | INTERGENIC | None |