Detailed information of SNP:
|
SNP ID:
sf0701497071(Gbrowse)
Chromosome: chr07 Position: 1497071 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.82% | 41.18% |
| All Indica | 799 | 31.91% | 68.09% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 6.67% | 93.33% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701497071 | G->T | INTERGENIC | None |