Detailed information of SNP:
|
SNP ID:
sf0701509076(Gbrowse)
Chromosome: chr07 Position: 1509076 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 62.49% | 37.51% |
| All Indica | 788 | 38.58% | 61.42% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 370 | 14.86% | 85.14% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 208 | 33.17% | 66.83% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701509076 | G->A | INTERGENIC | None |