Detailed information of SNP:
|
SNP ID:
sf0701509236(Gbrowse)
Chromosome: chr07 Position: 1509236 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 88.97% | 11.03% |
| All Indica | 794 | 86.27% | 13.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701509236 | T->C | INTERGENIC | None |