Detailed information of SNP:
|
SNP ID:
sf0701529157(Gbrowse)
Chromosome: chr07 Position: 1529157 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 71.75% | 28.25% |
| All Indica | 783 | 51.98% | 48.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 46.17% | 53.83% |
| Indica II | 210 | 71.43% | 28.57% |
| Indica Intermediate | 207 | 42.51% | 57.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701529157 | T->A | LOC_Os07g03740(LOC_Os07g03740.1) | Synonymous |