Detailed information of SNP:
|
SNP ID:
sf0701535026(Gbrowse)
Chromosome: chr07 Position: 1535026 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 51.34% | 48.66% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701535026 | G->A | LOC_Os07g03740(LOC_Os07g03740.1) | INTRON |