Detailed information of SNP:
|
SNP ID:
sf0701535569(Gbrowse)
Chromosome: chr07 Position: 1535569 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 54.89% | 45.11% |
| All Indica | 793 | 26.10% | 73.90% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 373 | 16.35% | 83.65% |
| Indica II | 212 | 46.70% | 53.30% |
| Indica Intermediate | 208 | 22.60% | 77.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701535569 | A->C | LOC_Os07g03740(LOC_Os07g03740.1) | INTRON |
| sf0701535569 | A->C | LOC_Os07g03740(LOC_Os07g03740.1) | SNPs that disrupt splice sites |