Detailed information of SNP:
|
SNP ID:
sf0701535585(Gbrowse)
Chromosome: chr07 Position: 1535585 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.64% | 45.36% |
| All Indica | 795 | 25.79% | 74.21% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 14.48% | 85.52% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 210 | 23.81% | 76.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701535585 | T->C | LOC_Os07g03740(LOC_Os07g03740.1) | Non-Synonymous SNP |