Detailed information of SNP:
|
SNP ID:
sf0701555427(Gbrowse)
Chromosome: chr07 Position: 1555427 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.93% | 47.07% |
| All Indica | 797 | 81.93% | 18.07% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701555427 | G->A | INTERGENIC | None |