Detailed information of SNP:
|
SNP ID:
sf0701558521(Gbrowse)
Chromosome: chr07 Position: 1558521 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 798 | 84.21% | 15.79% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 58.02% | 41.98% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701558521 | T->C | INTERGENIC | None |