Detailed information of SNP:
|
SNP ID:
sf0701642426(Gbrowse)
Chromosome: chr07 Position: 1642426 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.26% | 13.74% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701642426 | A->T | INTERGENIC | None |