Detailed information of SNP:



SNP ID: sf0701642484(Gbrowse)

Chromosome: chr07

Position: 1642484
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 96.54% 3.46%
All Indica798 100.00% 0.00%
All Japonica496 99.80% 0.20%
Aus67 31.34% 68.66%
Indica I374 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0701642484 C->T INTERGENIC None