Detailed information of SNP:
|
SNP ID:
sf0701664458(Gbrowse)
Chromosome: chr07 Position: 1664458 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 78.81% | 21.19% |
| All Indica | 795 | 78.62% | 21.38% |
| All Japonica | 495 | 87.07% | 12.93% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 372 | 65.05% | 34.95% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 333 | 85.59% | 14.41% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701664458 | G->A | INTERGENIC | None |