Detailed information of SNP:
|
SNP ID:
sf0701713319(Gbrowse)
Chromosome: chr07 Position: 1713319 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 66.53% | 33.47% |
| All Indica | 799 | 43.68% | 56.32% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 36.00% | 64.00% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701713319 | G->C | LOC_Os07g04040(LOC_Os07g04040.1) | UTR_3_PRIME |