Detailed information of SNP:
|
SNP ID:
sf0701736367(Gbrowse)
Chromosome: chr07 Position: 1736367 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 94.68% | 5.32% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 492 | 88.01% | 11.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 94.58% | 5.42% |
| Tropical Japonica | 92 | 57.61% | 42.39% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701736367 | G->T | LOC_Os07g04090(LOC_Os07g04090.1) | Non-Synonymous SNP |