Detailed information of SNP:
|
SNP ID:
sf0701737803(Gbrowse)
Chromosome: chr07 Position: 1737803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 94.48% | 5.52% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 494 | 88.26% | 11.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 332 | 94.88% | 5.12% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701737803 | C->T | LOC_Os07g04100(LOC_Os07g04100.1) | Non-Synonymous SNP |