Detailed information of SNP:
|
SNP ID:
sf0701791890(Gbrowse)
Chromosome: chr07 Position: 1791890 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.95% | 44.05% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701791890 | G->A | LOC_Os07g04180(LOC_Os07g04180.2) | INTRON |
| sf0701791890 | G->A | LOC_Os07g04180(LOC_Os07g04180.1) | INTRON |