Detailed information of SNP:
|
SNP ID:
sf0701854567(Gbrowse)
Chromosome: chr07 Position: 1854567 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 95.54% | 4.46% |
| All Indica | 708 | 91.81% | 8.19% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 317 | 87.38% | 12.62% |
| Indica II | 190 | 98.42% | 1.58% |
| Indica Intermediate | 201 | 92.54% | 7.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701854567 | A->T | LOC_Os07g04220(LOC_Os07g04220.1) | Non-Synonymous SNP |