Detailed information of SNP:



SNP ID: sf0701854567(Gbrowse)

Chromosome: chr07

Position: 1854567
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1324 95.54% 4.46%
All Indica708 91.81% 8.19%
All Japonica495 100.00% 0.00%
Aus66 100.00% 0.00%
Indica I317 87.38% 12.62%
Indica II190 98.42% 1.58%
Indica Intermediate201 92.54% 7.46%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica92 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0701854567 A->T LOC_Os07g04220(LOC_Os07g04220.1) Non-Synonymous SNP