Detailed information of SNP:
|
SNP ID:
sf0701900152(Gbrowse)
Chromosome: chr07 Position: 1900152 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 96.71% | 3.29% |
| All Indica | 781 | 95.39% | 4.61% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 364 | 94.78% | 5.22% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701900152 | C->T | INTERGENIC | None |