Detailed information of SNP:
|
SNP ID:
sf0701910491(Gbrowse)
Chromosome: chr07 Position: 1910491 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 55.61% | 44.39% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701910491 | A->G | INTERGENIC | None |