Detailed information of SNP:
|
SNP ID:
sf0701922850(Gbrowse)
Chromosome: chr07 Position: 1922850 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 52.36% | 47.64% |
| All Indica | 795 | 26.79% | 73.21% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 53 | 22.64% | 77.36% |
| Indica I | 373 | 0.80% | 99.20% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 22.01% | 77.99% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701922850 | T->C | INTERGENIC | None |